Assays: 32679 Stages: 22 Images: 429251. Rice Expression Database (RED) is a repository of gene expression profiles derived entirely from RNA-Seq data analysis on tissues spanning an entire range of rice growth stages and covering a wide variety of biotic and abiotic treatments. Description. ArrayExpress -- A public repository for microarray gene expression data at the EBI. TiGER is a database developed by the Bioinformatics Lab at Wilmer Eye Institute of Johns Hopkins University. This system is a database designed to offer a representation of ascidian embryonic development at the level of … Nucleic Acids Research, 2019 Oct 10 A single ChIP-seq dataset is sufficient for comprehensive analysis of motifs co-occurrence with MCOT package. Morpheus offers a myriad of tools for further display and analysis, including sorting, filtering, hierarchical … The AGEMAP database includes expression changes for 8,932 genes in 16 tissues as a function of age. Therefore, we constructed PLANEX as a co-expressed gene list and functional annotation for Arabidopsis thaliana, Glycine max, Hordeum vulgare, Oryza sativa, Solanum lycopersicum, Triticum aestivum, Vitis vinifera and Zea mays . The database is linked with PeanutBase, the main genomic resource of peanut. Gene expression data from published studies on small molecules, such as histone deacetylase (HAD) inhibitors, were positively connected with their samples using other HDA inhibitors in the database. Aniseed is a database dealing with ascidians. 176-193 (18) Reinhard Hehl, Julio C. Bolívar, Jeannette Koschmann, Yuri Brill and Lorenz Bülow. ‘Invaluable’ database helps solve mystery of how genes are regulated. Gene… GXD integrates different types of expression data at the transcript and protein level and captures expression information from many different mouse strains and mutants. … Nucleic Acids Research, 2019 Sep 17 Extensive transcriptional responses are co-ordinated by microRNAs … GENSAT Main Area of Focus: Gene Expression Nervous System Atlas (GENSAT) is an NIH-funded, publicly available gene expression atlas of the developing and adult central nervous system in the mouse. A gene expression network (GEN) is an ideal choice to grasp such expression profile similarities among genes simultaneous … OryzaExpress: an integrated database of gene expression networks and omics annotations … MEDIROM Announces Discovery of Disease Factors via Lifestyle DataBase x AI Gene Expression Analysis “Acquired, lifestyle factors at root cause for many diseases.” Download The number of internet resources for gene expression analysis in Arabidopsis thaliana has increased tremendously during the last years. ArrayWiki -- an enabling technology for sharing public microarray data repositories and meta-analyses. EMAGE:614. This database is fully operational. Gene Expression Resources. The Link Between DNA and Protein • DNA contains the … Genes/Proteins: 17554. Tissue-specific Gene Expression and Regulation (TiGER) . I'd like to find gene expression data for a few different primary cell lines. We found great heterogeneity in the amount of … Assay: ISH . Strikingly, a large … In summary, AhNGE serves as an … Select "Alzheimer's disease" under Gene Classification, and at the bottom you can download the expression data under the link 'Download this data.' These resources permit the database-assisted … The knowledgebase automatically integrates gene-centric data from ~150 web sources, including genomic, transcriptomic, proteomic, genetic, clinical and functional information. Abstract. 3. Researchers create gene expression database to gain new insights into pneumococcal infections . There should be 6 samples with 40 genes… The Gene Expression Database (GXD) is a community resource of mouse developmental expression information. by University of Maryland School of Medicine. The project also provides transgenic BAC-EGFP reporter and BAC-Cre recombinase driver mouse lines, which are available as research resources to the scientific … 06 Sep 2016 Clonal analysis lineage data TRACER enhancer data VISTA enhancer data EMBRYS gene expression data 3D OPT mapping now available. Download Gene Expression Database Model for free. Is there an online tool or database that can show which genes have been found to be expressed in different cell types? We found gr … This section provides a gateway to finding gene expression-related information on Arabidopsis thaliana from high throughput expression data, such as microarrays, GFP-fusion proteins, and Massively Parallel Signature Sequencing technologies.. Click on a header from the menu to expand the links and view available descriptions. As a core resource in BIG Data Center as well as a committed database … The AGEMAP database includes expression changes for 8,932 genes in 16 tissues as a function of age. Additionally, the expression level of different splicing variants can be retrieved from the database. Explore your genes of interest: bc-GenExMiner is a statistical mining tool of a breast cancer gene expression database (DNA microarrays and RNA-seq). The output displays the gene expression pattern in graphical as well as tabular form, along with further options to download the sequence data. Gene-expression data can be searched by text string, or accessed through searches on the other types of data, including individual cells, cell groups, sequences, loci, clones and bibliographical information. Similarity of gene expression profiles provides important clues for understanding the biological functions of genes, biological processes and metabolic pathways related to genes. SIB - Swiss Institute of Bioinformatics; CPR - Novo Nordisk Foundation Center Protein Research; EMBL - European Molecular Biology Laboratory The database contains tissue-specific gene expression profiles or expressed sequence tag (EST) data, cis-regulatory module (CRM) data, and combinatorial gene regulation data. SAGE libraries were available for both solid tumors and cell lines from breast, colon, ovarian, pancreatic, and prostate carcinomas and from gliomas and … Discussion About Bgee, a gene expression database; Create Issue About Bgee, a gene expression database; Create Issue About Bgee, a gene expression database × Title. To address this gap, the DICE (Database of Immune Cell Expression, Expression quantitative trait loci (eQTLs) and Epigenomics) project was established. Submit or search annotated microarray data. Access interactive, genome-wide image database of gene expression in the mouse brain. We present the AGEMAP (Atlas of Gene Expression in Mouse Aging Project) gene expression database, which is a resource that catalogs changes in gene expression as a function of age in mice. Databases and Web-Tools for Gene Expression Analysis in Arabidopsis thaliana. GeneCards ®: The Human Gene Database GeneCards is a searchable, integrative database that provides comprehensive, user-friendly information on all annotated and predicted human genes. These products are often proteins, but in non-protein-coding genes such as transfer RNA (tRNA) or small nuclear RNA (snRNA) genes, the product is a functional RNA.Gene expression is summarized in the … It showed how new cases of cancer could be classified by gene expression monitoring (via DNA microarray) and thereby provided a general approach for identifying new cancer classes and assigning tumors to known classes. If the crawler fails to access the endpoint, the score drops from … Area Name Value; Availability (100.0) Alive (Alive Score) Alive monitoring score that takes the value from 0 to 100. Gene Expression database of Normal and Tumor tissues 2 (GENT2) is an updated version of GENT, which has provided a user-friendly search platform for gene expression patterns across different normal and tumor tissues compiled from public gene expression data sets. When the human genome was … Bgee is based exclusively on curated "normal", healthy, expression data (e.g., no gene knock … To address these shortcomings, we present BloodSpot ( www.bloodspot.eu ), which includes and greatly extends our previously released database HemaExplorer, a database of gene expression profiles … Query profiles of estrogen-treated cells connected positively to the estrogen-treated samples in the database, and negatively to an anti-estrogenic compound. Spatial Search: Image Browse : Query Entries: Gene & Pathway Summaries: Analysis Tools : Example Data . KnockTF: a comprehensive human gene expression profile database with knockdown/knockout of transcription factors. Well as a core resource in BIG data Center as well as a resource... Developed by the Bioinformatics Lab at Wilmer Eye Institute of Johns Hopkins University larger biological context integration. Transcription factors of how genes are regulated level of different splicing variants can retrieved... 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